IL_1JZX_109

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGCACG*UUCAG

Length

11 nucleotides

Bulged bases

1JZX|1|A|C|2842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JZX_109 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.1927

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

1JZX|1|A|U|2822
1JZX|1|A|G|2823
1JZX|1|A|C|2824
1JZX|1|A|A|2825
1JZX|1|A|C|2826
1JZX|1|A|G|2827
*
1JZX|1|A|U|2840
1JZX|1|A|U|2841
1JZX|1|A|C|2842
1JZX|1|A|A|2843
1JZX|1|A|G|2844

Current chains

Chain A

23S rRNA

Nearby chains