IL_1JZX_110

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUUAAG*CGAAAAUGAUCGGGGC

Length

23 nucleotides

Bulged bases

1JZX|1|A|U|1037, 1JZX|1|A|A|1138, 1JZX|1|A|U|1141, 1JZX|1|A|U|1144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JZX_110 not in the Motif Atlas

Geometric match to IL_7A0S_037

Geometric discrepancy: 0.2154

The information below is about IL_7A0S_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.4

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

1JZX|1|A|G|1035
1JZX|1|A|G|1036
1JZX|1|A|U|1037
1JZX|1|A|U|1038
1JZX|1|A|A|1039
1JZX|1|A|A|1040
1JZX|1|A|G|1041
*
1JZX|1|A|C|1135
1JZX|1|A|G|1136
1JZX|1|A|A|1137
1JZX|1|A|A|1138
1JZX|1|A|A|1139
1JZX|1|A|A|1140
1JZX|1|A|U|1141
1JZX|1|A|G|1142
1JZX|1|A|A|1143
1JZX|1|A|U|1144
1JZX|1|A|C|1145
1JZX|1|A|G|1146
1JZX|1|A|G|1147
1JZX|1|A|G|1148
1JZX|1|A|G|1149
1JZX|1|A|C|1150

Current chains

Chain A

23S rRNA

Nearby chains