3D structure

PDB id
1JZX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UGG*CCAAG
Length
8 nucleotides
Bulged bases
1JZX|1|A|A|2521
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1JZX_119 not in the Motif Atlas
Geometric match to IL_3DD2_004
Geometric discrepancy: 0.3926
The information below is about IL_3DD2_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_09353.2
Basepair signature
cWW-cWW-L-cWW
Number of instances in this motif group
3

Unit IDs

1JZX|1|A|U|2501
1JZX|1|A|G|2502
1JZX|1|A|G|2503
*
1JZX|1|A|C|2518
1JZX|1|A|C|2519
1JZX|1|A|A|2520
1JZX|1|A|A|2521
1JZX|1|A|G|2522

Current chains

Chain A
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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