IL_1JZZ_019

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UU*GGA

Length

5 nucleotides

Bulged bases

1JZZ|1|A|G|742

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JZZ_019 not in the Motif Atlas

Homologous match to IL_5J7L_262

Geometric discrepancy: 0.2295

The information below is about IL_5J7L_262

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

1JZZ|1|A|U|715
1JZZ|1|A|U|716
*
1JZZ|1|A|G|741
1JZZ|1|A|G|742
1JZZ|1|A|A|743

Current chains

Chain A

23S rRNA

Nearby chains