IL_1JZZ_112

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGUUAAG*CGAAAAUGAUCGGGGC

Length

23 nucleotides

Bulged bases

1JZZ|1|A|U|1037, 1JZZ|1|A|A|1138, 1JZZ|1|A|U|1141, 1JZZ|1|A|U|1144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JZZ_112 not in the Motif Atlas

Geometric match to IL_7A0S_037

Geometric discrepancy: 0.2163

The information below is about IL_7A0S_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.4

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

1JZZ|1|A|G|1035
1JZZ|1|A|G|1036
1JZZ|1|A|U|1037
1JZZ|1|A|U|1038
1JZZ|1|A|A|1039
1JZZ|1|A|A|1040
1JZZ|1|A|G|1041
*
1JZZ|1|A|C|1135
1JZZ|1|A|G|1136
1JZZ|1|A|A|1137
1JZZ|1|A|A|1138
1JZZ|1|A|A|1139
1JZZ|1|A|A|1140
1JZZ|1|A|U|1141
1JZZ|1|A|G|1142
1JZZ|1|A|A|1143
1JZZ|1|A|U|1144
1JZZ|1|A|C|1145
1JZZ|1|A|G|1146
1JZZ|1|A|G|1147
1JZZ|1|A|G|1148
1JZZ|1|A|G|1149
1JZZ|1|A|C|1150

Current chains

Chain A

23S rRNA

Nearby chains