IL_1K01_002

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

1K01|1|A|A|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K01_002 not in the Motif Atlas

Geometric match to IL_7A0S_002

Geometric discrepancy: 0.1736

The information below is about IL_7A0S_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

1K01|1|A|G|36
1K01|1|A|C|37
*
1K01|1|A|G|454
1K01|1|A|A|455
1K01|1|A|C|456

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

Ribosomal Protein L4