IL_1K01_007

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAACUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K01_007 not in the Motif Atlas

Homologous match to IL_7RQB_006

Geometric discrepancy: 0.1224

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

1K01|1|A|G|165
1K01|1|A|G|166
1K01|1|A|A|167
1K01|1|A|A|168
1K01|1|A|C|169
1K01|1|A|U|170
1K01|1|A|G|171
*
1K01|1|A|C|178
1K01|1|A|U|179
1K01|1|A|C|180
1K01|1|A|A|181
1K01|1|A|G|182
1K01|1|A|U|183
1K01|1|A|A|184
1K01|1|A|C|185

Current chains

Chain A

23S rRNA

Nearby chains