IL_1K01_015

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

1K01|1|A|A|601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K01_015 not in the Motif Atlas

Homologous match to IL_7A0S_012

Geometric discrepancy: 0.3524

The information below is about IL_7A0S_012

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

1K01|1|A|G|600
1K01|1|A|A|601
1K01|1|A|C|602
*
1K01|1|A|G|678
1K01|1|A|C|679

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

Ribosomal Protein L4