IL_1K01_037

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

1K01|1|A|U|1044

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K01_037 not in the Motif Atlas

Homologous match to IL_4WF9_041

Geometric discrepancy: 0.2358

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76400.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

1K01|1|A|G|1042
1K01|1|A|A|1043
1K01|1|A|U|1044
1K01|1|A|G|1045
*
1K01|1|A|C|1132
1K01|1|A|G|1133
1K01|1|A|C|1134

Current chains

Chain A

23S rRNA

Nearby chains