IL_1K01_065

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

ACUUUG*CUGU

Length

10 nucleotides

Bulged bases

1K01|1|A|G|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K01_065 not in the Motif Atlas

Homologous match to IL_7A0S_062

Geometric discrepancy: 0.1719

The information below is about IL_7A0S_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

1K01|1|A|A|1686
1K01|1|A|C|1687
1K01|1|A|U|1688
1K01|1|A|U|1689
1K01|1|A|U|1690
1K01|1|A|G|1691
*
1K01|1|A|C|1973
1K01|1|A|U|1974
1K01|1|A|G|1975
1K01|1|A|U|1976

Current chains

Chain A

23S rRNA

Nearby chains