IL_1K01_066

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

1K01|1|A|G|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K01_066 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1383

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

1K01|1|A|C|1703
1K01|1|A|G|1704
1K01|1|A|U|1705
1K01|1|A|A|1706
1K01|1|A|A|1707
1K01|1|A|C|1708
*
1K01|1|A|G|1713
1K01|1|A|A|1714
1K01|1|A|A|1715
1K01|1|A|G|1716
1K01|1|A|A|1717
1K01|1|A|A|1718
1K01|1|A|G|1719

Current chains

Chain A

23S rRNA

Nearby chains