IL_1K01_072

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGC*GUGAA

Length

8 nucleotides

Bulged bases

1K01|1|A|G|1882, 1K01|1|A|A|1883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K01_072 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2493

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

1K01|1|A|U|1833
1K01|1|A|G|1834
1K01|1|A|C|1835
*
1K01|1|A|G|1880
1K01|1|A|U|1881
1K01|1|A|G|1882
1K01|1|A|A|1883
1K01|1|A|A|1884

Current chains

Chain A

23S rRNA

Nearby chains