IL_1K01_074

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCGAAAUUCCUUGUC*GACCUGCAC

Length

24 nucleotides

Bulged bases

1K01|1|A|A|1921, 1K01|1|A|U|1927, 1K01|1|A|U|1946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1K01|1|A|G|1916
1K01|1|A|C|1917
1K01|1|A|G|1918
1K01|1|A|A|1919
1K01|1|A|A|1920
1K01|1|A|A|1921
1K01|1|A|U|1922
1K01|1|A|U|1923
1K01|1|A|C|1924
1K01|1|A|C|1925
1K01|1|A|U|1926
1K01|1|A|U|1927
1K01|1|A|G|1928
1K01|1|A|U|1929
1K01|1|A|C|1930
*
1K01|1|A|G|1942
1K01|1|A|A|1943
1K01|1|A|C|1944
1K01|1|A|C|1945
1K01|1|A|U|1946
1K01|1|A|G|1947
1K01|1|A|C|1948
1K01|1|A|A|1949
1K01|1|A|C|1950

Current chains

Chain A

23S rRNA

Nearby chains