IL_1K01_083

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAA*UGUAG

Length

8 nucleotides

Bulged bases

1K01|1|A|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K01_083 not in the Motif Atlas

Homologous match to IL_4WF9_086

Geometric discrepancy: 0.3249

The information below is about IL_4WF9_086

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_14250.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

11

Unit IDs

1K01|1|A|C|2276
1K01|1|A|A|2277
1K01|1|A|A|2278
*
1K01|1|A|U|2296
1K01|1|A|G|2297
1K01|1|A|U|2298
1K01|1|A|A|2299
1K01|1|A|G|2300

Current chains

Chain A

23S rRNA

Nearby chains