IL_1K01_105

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUG,CAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K01_105 not in the Motif Atlas

Homologous match to IL_4WF9_105

Geometric discrepancy: 0.3142

The information below is about IL_4WF9_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1K01|1|A|C|2771
1K01|1|A|U|2772
1K01|1|A|G|2773
*
1K01|1|A|C|2779
1K01|1|A|A|2780
1K01|1|A|G|2781

Current chains

Chain A

23S rRNA

Nearby chains