IL_1K01_109

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUUAAG*CGAAAAUGAUCGGGGC

Length

23 nucleotides

Bulged bases

1K01|1|A|U|1037, 1K01|1|A|A|1138, 1K01|1|A|U|1141, 1K01|1|A|U|1144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K01_109 not in the Motif Atlas

Geometric match to IL_7A0S_037

Geometric discrepancy: 0.2136

The information below is about IL_7A0S_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.4

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

1K01|1|A|G|1035
1K01|1|A|G|1036
1K01|1|A|U|1037
1K01|1|A|U|1038
1K01|1|A|A|1039
1K01|1|A|A|1040
1K01|1|A|G|1041
*
1K01|1|A|C|1135
1K01|1|A|G|1136
1K01|1|A|A|1137
1K01|1|A|A|1138
1K01|1|A|A|1139
1K01|1|A|A|1140
1K01|1|A|U|1141
1K01|1|A|G|1142
1K01|1|A|A|1143
1K01|1|A|U|1144
1K01|1|A|C|1145
1K01|1|A|G|1146
1K01|1|A|G|1147
1K01|1|A|G|1148
1K01|1|A|G|1149
1K01|1|A|C|1150

Current chains

Chain A

23S rRNA

Nearby chains