IL_1K01_111

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UCGCAUAGACAGCCA*UGGUCGAGUGA

Length

26 nucleotides

Bulged bases

1K01|1|A|U|1056, 1K01|1|A|A|1057

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1K01|1|A|U|1051
1K01|1|A|C|1052
1K01|1|A|G|1053
1K01|1|A|C|1054
1K01|1|A|A|1055
1K01|1|A|U|1056
1K01|1|A|A|1057
1K01|1|A|G|1058
1K01|1|A|A|1059
1K01|1|A|C|1060
1K01|1|A|A|1061
1K01|1|A|G|1062
1K01|1|A|C|1063
1K01|1|A|C|1064
1K01|1|A|A|1065
*
1K01|1|A|U|1116
1K01|1|A|G|1117
1K01|1|A|G|1118
1K01|1|A|U|1119
1K01|1|A|C|1120
1K01|1|A|G|1121
1K01|1|A|A|1122
1K01|1|A|G|1123
1K01|1|A|U|1124
1K01|1|A|G|1125
1K01|1|A|A|1126

Current chains

Chain A

23S rRNA

Nearby chains