IL_1K8A_003

3D structure

PDB id

1K8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCG*CAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K8A_003 not in the Motif Atlas

Homologous match to IL_4V9F_003

Geometric discrepancy: 0.0426

The information below is about IL_4V9F_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

1K8A|1|A|G|39
1K8A|1|A|C|40
1K8A|1|A|G|41
*
1K8A|1|A|C|440
1K8A|1|A|A|441
1K8A|1|A|A|442
1K8A|1|A|C|443

Current chains

Chain A

23S RRNA

Nearby chains

Chain 2

RIBOSOMAL PROTEIN L37E

Chain E

RIBOSOMAL PROTEIN L4