IL_1K8A_027

3D structure

PDB id

1K8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AU*AGU

Length

5 nucleotides

Bulged bases

1K8A|1|A|G|820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K8A_027 not in the Motif Atlas

Homologous match to IL_4V9F_026

Geometric discrepancy: 0.0745

The information below is about IL_4V9F_026

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

1K8A|1|A|A|793
1K8A|1|A|U|794
*
1K8A|1|A|A|819
1K8A|1|A|G|820
1K8A|1|A|U|821

Current chains

Chain A

23S RRNA

Nearby chains

Chain 1

RIBOSOMAL PROTEIN L37Ae

Chain C

RIBOSOMAL PROTEIN L2

Chain Q

RIBOSOMAL PROTEIN L19E