IL_1K8A_031
3D structure
- PDB id
- 1K8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GGG*CCAUC
- Length
- 8 nucleotides
- Bulged bases
- 1K8A|1|A|G|869, 1K8A|1|A|C|881, 1K8A|1|A|A|882
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1K8A_031 not in the Motif Atlas
- Homologous match to IL_4V9F_030
- Geometric discrepancy: 0.0537
- The information below is about IL_4V9F_030
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_57881.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
1K8A|1|A|G|868
1K8A|1|A|G|869
1K8A|1|A|G|870
*
1K8A|1|A|C|880
1K8A|1|A|C|881
1K8A|1|A|A|882
1K8A|1|A|U|883
1K8A|1|A|C|884
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 2
- RIBOSOMAL PROTEIN L37E
- Chain C
- RIBOSOMAL PROTEIN L2
- Chain N
- RIBOSOMAL PROTEIN L15E
- Chain S
- RIBOSOMAL PROTEIN L22
Coloring options: