IL_1K8A_042

3D structure

PDB id

1K8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGG*CG

Length

5 nucleotides

Bulged bases

1K8A|1|A|G|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K8A_042 not in the Motif Atlas

Homologous match to IL_4V9F_041

Geometric discrepancy: 0.0372

The information below is about IL_4V9F_041

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

1K8A|1|A|U|1136
1K8A|1|A|G|1137
1K8A|1|A|G|1138
*
1K8A|1|A|C|1225
1K8A|1|A|G|1226

Current chains

Chain A

23S RRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain G

RIBOSOMAL PROTEIN L6

Chain J

RIBOSOMAL PROTEIN L10E