IL_1K8A_055

3D structure

PDB id

1K8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUCG*UCAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K8A_055 not in the Motif Atlas

Homologous match to IL_4V9F_055

Geometric discrepancy: 0.0337

The information below is about IL_4V9F_055

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

1K8A|1|A|G|1542
1K8A|1|A|G|1543
1K8A|1|A|U|1544
1K8A|1|A|C|1545
1K8A|1|A|G|1546
*
1K8A|1|A|U|1639
1K8A|1|A|C|1640
1K8A|1|A|A|1641
1K8A|1|A|A|1642
1K8A|1|A|C|1643

Current chains

Chain A

23S RRNA

Nearby chains

Chain Q

RIBOSOMAL PROTEIN L19E