IL_1K8A_056

3D structure

PDB id

1K8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAC*GCAUAG

Length

11 nucleotides

Bulged bases

1K8A|1|A|U|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K8A_056 not in the Motif Atlas

Homologous match to IL_4V9F_056

Geometric discrepancy: 0.0534

The information below is about IL_4V9F_056

Detailed Annotation

tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_62654.1

Basepair signature

cWW-tSH-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

1K8A|1|A|C|1570
1K8A|1|A|G|1571
1K8A|1|A|A|1572
1K8A|1|A|A|1573
1K8A|1|A|C|1574
*
1K8A|1|A|G|1622
1K8A|1|A|C|1623
1K8A|1|A|A|1624
1K8A|1|A|U|1625
1K8A|1|A|A|1626
1K8A|1|A|G|1627

Current chains

Chain A

23S RRNA

Nearby chains