IL_1K8A_059

3D structure

PDB id

1K8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGCAAC*GGC

Length

10 nucleotides

Bulged bases

1K8A|1|A|G|1730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K8A_059 not in the Motif Atlas

Homologous match to IL_4V9F_059

Geometric discrepancy: 0.0386

The information below is about IL_4V9F_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.5

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

1K8A|1|A|G|1728
1K8A|1|A|A|1729
1K8A|1|A|G|1730
1K8A|1|A|C|1731
1K8A|1|A|A|1732
1K8A|1|A|A|1733
1K8A|1|A|C|1734
*
1K8A|1|A|G|2045
1K8A|1|A|G|2046
1K8A|1|A|C|2047

Current chains

Chain A

23S RRNA

Nearby chains

Chain D

RIBOSOMAL PROTEIN L3

Chain S

RIBOSOMAL PROTEIN L22

Chain Y

RIBOSOMAL PROTEIN L31E