IL_1K8A_069
3D structure
- PDB id
- 1K8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGAACAC*GACGAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1K8A_069 not in the Motif Atlas
- Homologous match to IL_4V9F_069
- Geometric discrepancy: 0.1003
- The information below is about IL_4V9F_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88116.2
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
1K8A|1|A|U|1907
1K8A|1|A|G|1908
1K8A|1|A|A|1909
1K8A|1|A|A|1910
1K8A|1|A|C|1911
1K8A|1|A|A|1912
1K8A|1|A|C|1913
*
1K8A|1|A|G|1926
1K8A|1|A|A|1927
1K8A|1|A|C|1928
1K8A|1|A|G|1929
1K8A|1|A|A|1930
1K8A|1|A|A|1931
1K8A|1|A|G|1932
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 4
- RIBOSOMAL PROTEIN L44E
- Chain C
- RIBOSOMAL PROTEIN L2
Coloring options: