IL_1K8A_093

3D structure

PDB id

1K8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UU*ACGUG

Length

7 nucleotides

Bulged bases

1K8A|1|A|U|2749

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K8A_093 not in the Motif Atlas

Homologous match to IL_4V9F_095

Geometric discrepancy: 0.0416

The information below is about IL_4V9F_095

Detailed Annotation

Bulged stacked bases

Broad Annotation

No text annotation

Motif group

IL_07171.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

1K8A|1|A|U|2732
1K8A|1|A|U|2733
*
1K8A|1|A|A|2746
1K8A|1|A|C|2747
1K8A|1|A|G|2748
1K8A|1|A|U|2749
1K8A|1|A|G|2750

Current chains

Chain A

23S RRNA

Nearby chains

Chain Q

RIBOSOMAL PROTEIN L19E

Chain Y

RIBOSOMAL PROTEIN L31E