IL_1K8A_094

3D structure

PDB id

1K8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

1K8A|1|A|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K8A_094 not in the Motif Atlas

Homologous match to IL_4V9F_096

Geometric discrepancy: 0.0319

The information below is about IL_4V9F_096

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

1K8A|1|A|G|2772
1K8A|1|A|G|2773
1K8A|1|A|U|2774
1K8A|1|A|A|2775
1K8A|1|A|A|2776
1K8A|1|A|G|2777
*
1K8A|1|A|C|2797
1K8A|1|A|G|2798
1K8A|1|A|A|2799
1K8A|1|A|A|2800
1K8A|1|A|A|2801
1K8A|1|A|C|2802

Current chains

Chain A

23S RRNA

Nearby chains

Chain G

RIBOSOMAL PROTEIN L6

Chain K

RIBOSOMAL PROTEIN L13