IL_1K8A_099

3D structure

PDB id

1K8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

1K8A|1|B|A|3065

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K8A_099 not in the Motif Atlas

Homologous match to IL_4V9F_101

Geometric discrepancy: 0.1006

The information below is about IL_4V9F_101

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

1K8A|1|B|C|3015
1K8A|1|B|G|3016
*
1K8A|1|B|C|3064
1K8A|1|B|A|3065
1K8A|1|B|G|3066

Current chains

Chain B

5S RRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain F

RIBOSOMAL PROTEIN L5

Chain O

RIBOSOMAL PROTEIN L18