IL_1K8A_105

3D structure

PDB id

1K8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAG*CAAUGUG

Length

12 nucleotides

Bulged bases

1K8A|1|A|U|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K8A_105 not in the Motif Atlas

Homologous match to IL_4V9F_108

Geometric discrepancy: 0.0302

The information below is about IL_4V9F_108

Detailed Annotation

Kink-turn with embedded cWW pair

Broad Annotation

No text annotation

Motif group

IL_33886.1

Basepair signature

cWW-L-cWW-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

1K8A|1|A|C|245
1K8A|1|A|G|246
1K8A|1|A|A|247
1K8A|1|A|A|248
1K8A|1|A|G|249
*
1K8A|1|A|C|260
1K8A|1|A|A|261
1K8A|1|A|A|262
1K8A|1|A|U|263
1K8A|1|A|G|264
1K8A|1|A|U|265
1K8A|1|A|G|266

Current chains

Chain A

23S RRNA

Nearby chains

Chain H

RIBOSOMAL PROTEIN L7AE

Chain N

RIBOSOMAL PROTEIN L15E