IL_1K9M_092

3D structure

PDB id

1K9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of tylosin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGUAC*GGUAG

Length

10 nucleotides

Bulged bases

1K9M|1|A|U|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1K9M_092 not in the Motif Atlas

Homologous match to IL_4V9F_094

Geometric discrepancy: 0.0412

The information below is about IL_4V9F_094

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_45790.2

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

1K9M|1|A|U|2724
1K9M|1|A|G|2725
1K9M|1|A|U|2726
1K9M|1|A|A|2727
1K9M|1|A|C|2728
*
1K9M|1|A|G|2754
1K9M|1|A|G|2755
1K9M|1|A|U|2756
1K9M|1|A|A|2757
1K9M|1|A|G|2758

Current chains

Chain A

23S RRNA

Nearby chains

Chain D

RIBOSOMAL PROTEIN L3

Chain V

RIBOSOMAL PROTEIN L24E

Chain Y

RIBOSOMAL PROTEIN L31E