IL_1KC8_022

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

CAUG*CG

Length

6 nucleotides

Bulged bases

1KC8|1|A|A|700, 1KC8|1|A|U|701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KC8_022 not in the Motif Atlas

Homologous match to IL_4V9F_021

Geometric discrepancy: 0.0412

The information below is about IL_4V9F_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

1KC8|1|A|C|699
1KC8|1|A|A|700
1KC8|1|A|U|701
1KC8|1|A|G|702
*
1KC8|1|A|C|726
1KC8|1|A|G|727

Current chains

Chain A

23S RRNA

Nearby chains

Chain M

RIBOSOMAL PROTEIN L15

Chain P

RIBOSOMAL PROTEIN L18E