3D structure

PDB id
1KC8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit
Experimental method
X-RAY DIFFRACTION
Resolution
3.01 Å

Loop

Sequence
GAAUC*GCAACAGC
Length
13 nucleotides
Bulged bases
1KC8|1|A|A|894, 1KC8|1|A|G|898
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1KC8_025 not in the Motif Atlas
Homologous match to IL_4V9F_024
Geometric discrepancy: 0.0381
The information below is about IL_4V9F_024
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_54041.2
Basepair signature
cWW-L-R-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

1KC8|1|A|G|765
1KC8|1|A|A|766
1KC8|1|A|A|767
1KC8|1|A|U|768
1KC8|1|A|C|769
*
1KC8|1|A|G|892
1KC8|1|A|C|893
1KC8|1|A|A|894
1KC8|1|A|A|895
1KC8|1|A|C|896
1KC8|1|A|A|897
1KC8|1|A|G|898
1KC8|1|A|C|899

Current chains

Chain A
23S RRNA

Nearby chains

Chain 2
RIBOSOMAL PROTEIN L37E
Chain E
RIBOSOMAL PROTEIN L4
Chain M
RIBOSOMAL PROTEIN L15
Chain N
RIBOSOMAL PROTEIN L15E

Coloring options:


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