IL_1KC8_056

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

CGAAC*GCAUAG

Length

11 nucleotides

Bulged bases

1KC8|1|A|U|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KC8_056 not in the Motif Atlas

Homologous match to IL_4V9F_056

Geometric discrepancy: 0.0504

The information below is about IL_4V9F_056

Detailed Annotation

tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_62654.1

Basepair signature

cWW-tSH-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

1KC8|1|A|C|1570
1KC8|1|A|G|1571
1KC8|1|A|A|1572
1KC8|1|A|A|1573
1KC8|1|A|C|1574
*
1KC8|1|A|G|1622
1KC8|1|A|C|1623
1KC8|1|A|A|1624
1KC8|1|A|U|1625
1KC8|1|A|A|1626
1KC8|1|A|G|1627

Current chains

Chain A

23S RRNA

Nearby chains