IL_1KC8_059
3D structure
- PDB id
- 1KC8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.01 Å
Loop
- Sequence
- GAGCAAC*GGC
- Length
- 10 nucleotides
- Bulged bases
- 1KC8|1|A|G|1730
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1KC8_059 not in the Motif Atlas
- Homologous match to IL_4V9F_059
- Geometric discrepancy: 0.0324
- The information below is about IL_4V9F_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12566.4
- Basepair signature
- cWW-L-tHS-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
1KC8|1|A|G|1728
1KC8|1|A|A|1729
1KC8|1|A|G|1730
1KC8|1|A|C|1731
1KC8|1|A|A|1732
1KC8|1|A|A|1733
1KC8|1|A|C|1734
*
1KC8|1|A|G|2045
1KC8|1|A|G|2046
1KC8|1|A|C|2047
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain D
- RIBOSOMAL PROTEIN L3
- Chain S
- RIBOSOMAL PROTEIN L22
- Chain Y
- RIBOSOMAL PROTEIN L31E
Coloring options: