IL_1KC8_060

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

UAG*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KC8_060 not in the Motif Atlas

Homologous match to IL_4V9F_060

Geometric discrepancy: 0.0394

The information below is about IL_4V9F_060

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_67095.2

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

1KC8|1|A|U|1741
1KC8|1|A|A|1742
1KC8|1|A|G|1743
*
1KC8|1|A|C|2036
1KC8|1|A|C|2037
1KC8|1|A|A|2038

Current chains

Chain A

23S RRNA

Nearby chains

Chain D

RIBOSOMAL PROTEIN L3

Chain L

RIBOSOMAL PROTEIN L14

Chain V

RIBOSOMAL PROTEIN L24E