IL_1KC8_076

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

1KC8|1|A|G|2271

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KC8_076 not in the Motif Atlas

Homologous match to IL_4V9F_076

Geometric discrepancy: 0.0785

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

1KC8|1|A|C|2122
1KC8|1|A|A|2123
1KC8|1|A|G|2124
*
1KC8|1|A|C|2269
1KC8|1|A|G|2270
1KC8|1|A|G|2271
1KC8|1|A|G|2272

Current chains

Chain A

23S RRNA

Nearby chains

Chain 4

RIBOSOMAL PROTEIN L44E

Chain C

RIBOSOMAL PROTEIN L2

Chain N

RIBOSOMAL PROTEIN L15E