IL_1KC8_087

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

1KC8|1|A|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KC8_087 not in the Motif Atlas

Homologous match to IL_4V9F_089

Geometric discrepancy: 0.0481

The information below is about IL_4V9F_089

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

1KC8|1|A|U|2557
1KC8|1|A|G|2558
*
1KC8|1|A|C|2575
1KC8|1|A|A|2576
1KC8|1|A|A|2577
1KC8|1|A|G|2578

Current chains

Chain A

23S RRNA

Nearby chains