3D structure

PDB id
1KC8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit
Experimental method
X-RAY DIFFRACTION
Resolution
3.01 Å

Loop

Sequence
UGUAC*GGUAG
Length
10 nucleotides
Bulged bases
1KC8|1|A|U|2726
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1KC8_092 not in the Motif Atlas
Homologous match to IL_4V9F_094
Geometric discrepancy: 0.0401
The information below is about IL_4V9F_094
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_23774.1
Basepair signature
cWW-L-R-L-tHS-cWW
Number of instances in this motif group
11

Unit IDs

1KC8|1|A|U|2724
1KC8|1|A|G|2725
1KC8|1|A|U|2726
1KC8|1|A|A|2727
1KC8|1|A|C|2728
*
1KC8|1|A|G|2754
1KC8|1|A|G|2755
1KC8|1|A|U|2756
1KC8|1|A|A|2757
1KC8|1|A|G|2758

Current chains

Chain A
23S RRNA

Nearby chains

Chain D
RIBOSOMAL PROTEIN L3
Chain V
RIBOSOMAL PROTEIN L24E
Chain Y
RIBOSOMAL PROTEIN L31E

Coloring options:


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