IL_1KC8_105

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

CGAAG*CAAUGUG

Length

12 nucleotides

Bulged bases

1KC8|1|A|U|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KC8_105 not in the Motif Atlas

Homologous match to IL_4V9F_108

Geometric discrepancy: 0.0261

The information below is about IL_4V9F_108

Detailed Annotation

Kink-turn with embedded cWW pair

Broad Annotation

No text annotation

Motif group

IL_33886.1

Basepair signature

cWW-L-cWW-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

1KC8|1|A|C|245
1KC8|1|A|G|246
1KC8|1|A|A|247
1KC8|1|A|A|248
1KC8|1|A|G|249
*
1KC8|1|A|C|260
1KC8|1|A|A|261
1KC8|1|A|A|262
1KC8|1|A|U|263
1KC8|1|A|G|264
1KC8|1|A|U|265
1KC8|1|A|G|266

Current chains

Chain A

23S RRNA

Nearby chains

Chain H

RIBOSOMAL PROTEIN L7AE

Chain N

RIBOSOMAL PROTEIN L15E