IL_1KC8_108
3D structure
- PDB id
- 1KC8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.01 Å
Loop
- Sequence
- GGAAUUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1KC8_108 not in the Motif Atlas
- Homologous match to IL_4V9F_111
- Geometric discrepancy: 0.0313
- The information below is about IL_4V9F_111
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22854.4
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 7
Unit IDs
1KC8|1|A|G|1744
1KC8|1|A|G|1745
1KC8|1|A|A|1746
1KC8|1|A|A|1747
1KC8|1|A|U|1748
1KC8|1|A|U|1749
1KC8|1|A|C|1750
1KC8|1|A|G|1751
1KC8|1|A|G|1752
*
1KC8|1|A|C|2031
1KC8|1|A|U|2032
1KC8|1|A|G|2033
1KC8|1|A|U|2034
1KC8|1|A|C|2035
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain D
- RIBOSOMAL PROTEIN L3
- Chain L
- RIBOSOMAL PROTEIN L14
Coloring options: