IL_1KD1_006
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AGAACUG*CUCAGUAU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1KD1_006 not in the Motif Atlas
- Geometric match to IL_4V9F_006
- Geometric discrepancy: 0.0394
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
1KD1|1|A|A|158
1KD1|1|A|G|159
1KD1|1|A|A|160
1KD1|1|A|A|161
1KD1|1|A|C|162
1KD1|1|A|U|163
1KD1|1|A|G|164
*
1KD1|1|A|C|171
1KD1|1|A|U|172
1KD1|1|A|C|173
1KD1|1|A|A|174
1KD1|1|A|G|175
1KD1|1|A|U|176
1KD1|1|A|A|177
1KD1|1|A|U|178
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 2
- RIBOSOMAL PROTEIN L37E
- Chain 4
- RIBOSOMAL PROTEIN L44E
- Chain M
- RIBOSOMAL PROTEIN L15
- Chain N
- RIBOSOMAL PROTEIN L15E
Coloring options: