IL_1KD1_007
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UUAGUAA*UGAACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1KD1_007 not in the Motif Atlas
- Homologous match to IL_4V9F_007
- Geometric discrepancy: 0.0352
- The information below is about IL_4V9F_007
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
1KD1|1|A|U|210
1KD1|1|A|U|211
1KD1|1|A|A|212
1KD1|1|A|G|213
1KD1|1|A|U|214
1KD1|1|A|A|215
1KD1|1|A|A|216
*
1KD1|1|A|U|224
1KD1|1|A|G|225
1KD1|1|A|A|226
1KD1|1|A|A|227
1KD1|1|A|C|228
1KD1|1|A|G|229
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 4
- RIBOSOMAL PROTEIN L44E
- Chain M
- RIBOSOMAL PROTEIN L15
- Chain N
- RIBOSOMAL PROTEIN L15E
Coloring options: