IL_1KD1_011
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUCUCAUC*GUGCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1KD1_011 not in the Motif Atlas
- Homologous match to IL_4V9F_011
- Geometric discrepancy: 0.4133
- The information below is about IL_4V9F_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22028.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
1KD1|1|A|C|280
1KD1|1|A|U|281
1KD1|1|A|C|282
1KD1|1|A|U|283
1KD1|1|A|C|284
1KD1|1|A|A|285
1KD1|1|A|U|286
1KD1|1|A|C|287
*
1KD1|1|A|G|365
1KD1|1|A|U|366
1KD1|1|A|G|367
1KD1|1|A|C|368
1KD1|1|A|G|369
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain N
- RIBOSOMAL PROTEIN L15E
Coloring options: