IL_1KD1_021

3D structure

PDB id

1KD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAAC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KD1_021 not in the Motif Atlas

Homologous match to IL_4V9F_020

Geometric discrepancy: 0.0337

The information below is about IL_4V9F_020

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

1KD1|1|A|C|663
1KD1|1|A|U|664
1KD1|1|A|A|665
1KD1|1|A|A|666
1KD1|1|A|C|667
*
1KD1|1|A|G|679
1KD1|1|A|G|680
1KD1|1|A|G|681
1KD1|1|A|A|682
1KD1|1|A|G|683

Current chains

Chain A

23S RRNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN L4

Chain M

RIBOSOMAL PROTEIN L15