IL_1KD1_028
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGAAG*UGGAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1KD1_028 not in the Motif Atlas
- Homologous match to IL_4V9F_027
- Geometric discrepancy: 0.0356
- The information below is about IL_4V9F_027
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
1KD1|1|A|U|794
1KD1|1|A|G|795
1KD1|1|A|A|796
1KD1|1|A|A|797
1KD1|1|A|G|798
*
1KD1|1|A|U|815
1KD1|1|A|G|816
1KD1|1|A|G|817
1KD1|1|A|A|818
1KD1|1|A|A|819
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 1
- RIBOSOMAL PROTEIN L37Ae
- Chain C
- RIBOSOMAL PROTEIN L2
- Chain Q
- RIBOSOMAL PROTEIN L19E
Coloring options: