IL_1KD1_052

3D structure

PDB id

1KD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAAG*CGAAAUG

Length

12 nucleotides

Bulged bases

1KD1|1|A|A|1486

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KD1_052 not in the Motif Atlas

Homologous match to IL_4V9F_052

Geometric discrepancy: 0.0391

The information below is about IL_4V9F_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_10133.1

Basepair signature

cWW-L-R-tHW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

1KD1|1|A|C|1456
1KD1|1|A|U|1457
1KD1|1|A|A|1458
1KD1|1|A|A|1459
1KD1|1|A|G|1460
*
1KD1|1|A|C|1483
1KD1|1|A|G|1484
1KD1|1|A|A|1485
1KD1|1|A|A|1486
1KD1|1|A|A|1487
1KD1|1|A|U|1488
1KD1|1|A|G|1489

Current chains

Chain A

23S RRNA

Nearby chains

Chain 2

RIBOSOMAL PROTEIN L37E

Chain 3

RIBOSOMAL PROTEIN L39E

Chain C

RIBOSOMAL PROTEIN L2