IL_1KD1_083

3D structure

PDB id

1KD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCAAG*CGACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KD1_083 not in the Motif Atlas

Homologous match to IL_4V9F_085

Geometric discrepancy: 0.0448

The information below is about IL_4V9F_085

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

1KD1|1|A|G|2501
1KD1|1|A|C|2502
1KD1|1|A|A|2503
1KD1|1|A|A|2504
1KD1|1|A|G|2505
*
1KD1|1|A|C|2515
1KD1|1|A|G|2516
1KD1|1|A|A|2517
1KD1|1|A|C|2518
1KD1|1|A|C|2519

Current chains

Chain A

23S RRNA

Nearby chains

Chain J

RIBOSOMAL PROTEIN L10E