IL_1KD1_092
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGUAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 1KD1|1|A|U|2726
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1KD1_092 not in the Motif Atlas
- Homologous match to IL_4V9F_094
- Geometric discrepancy: 0.0392
- The information below is about IL_4V9F_094
- Detailed Annotation
- UAA/GAN variation
- Broad Annotation
- UAA/GAN variation
- Motif group
- IL_45790.2
- Basepair signature
- cWW-tSH-L-tHS-cWW
- Number of instances in this motif group
- 12
Unit IDs
1KD1|1|A|U|2724
1KD1|1|A|G|2725
1KD1|1|A|U|2726
1KD1|1|A|A|2727
1KD1|1|A|C|2728
*
1KD1|1|A|G|2754
1KD1|1|A|G|2755
1KD1|1|A|U|2756
1KD1|1|A|A|2757
1KD1|1|A|G|2758
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain D
- RIBOSOMAL PROTEIN L3
- Chain V
- RIBOSOMAL PROTEIN L24E
- Chain Y
- RIBOSOMAL PROTEIN L31E
Coloring options: