IL_1KD1_093

3D structure

PDB id

1KD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UU*ACGUG

Length

7 nucleotides

Bulged bases

1KD1|1|A|U|2749

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KD1_093 not in the Motif Atlas

Homologous match to IL_4V9F_095

Geometric discrepancy: 0.044

The information below is about IL_4V9F_095

Detailed Annotation

Bulged stacked bases

Broad Annotation

No text annotation

Motif group

IL_07171.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

1KD1|1|A|U|2732
1KD1|1|A|U|2733
*
1KD1|1|A|A|2746
1KD1|1|A|C|2747
1KD1|1|A|G|2748
1KD1|1|A|U|2749
1KD1|1|A|G|2750

Current chains

Chain A

23S RRNA

Nearby chains

Chain Q

RIBOSOMAL PROTEIN L19E

Chain Y

RIBOSOMAL PROTEIN L31E