IL_1KOC_001

3D structure

PDB id

1KOC (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA APTAMER COMPLEXED WITH ARGININE, NMR

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GAAGG*CGC

Length

8 nucleotides

Bulged bases

1KOC|1|A|A|8

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1KOC_001 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.3211

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

1KOC|1|A|G|6
1KOC|1|A|A|7
1KOC|1|A|A|8
1KOC|1|A|G|9
1KOC|1|A|G|10
*
1KOC|1|B|C|37
1KOC|1|B|G|38
1KOC|1|B|C|39

Current chains

Chain A

RNA (5'-R(P*AP*GP*AP*AP*GP*GP*AP*GP*CP*GP*U)-3')

Chain B

RNA (5'-R(P*AP*CP*AP*GP*GP*UP*AP*GP*GP*UP*CP*GP*CP*U)-3')

Nearby chains